append measureSOP and calculate area, then put down deleteSOP and in the filter expression field type $AREA == 0 this removes all the prims with zero area (curves or some trim surf operation leftovers etc.)
Can you attach the file? It might be then badly interpreted multi trim surface ( houdini is really weak with them) or some other stuff with very minimal area. You can increase delete threshold to say, 0.001 (this may change depend on the scale of your model).